Mass Spectrometry-Omics Data analysis Tools
1. Contaminant Protein Libraries for All Bottom-Up Proteomics:
Currently available libraries on Github:
https://github.com/HaoGroup-ProtContLib
- Universal contaminant protein sequence (FASTA) and spectral libraries
- Sample type-specific contaminant protein FASTA libraries
(human cell culture, mouse samples, rat samples, continue updating this list)
Citation: A. Frankenfield, A., Ni, J., Ahmed,M., Hao, L., “Protein Contaminants Matter: Building Universal Protein Contaminant Libraries for DDA & DIA Proteomics“, Journal of Proteome Research, 2022.
2. Metandem Online Software for Isobaric Labeling Metabolomics.
Capabilities: Isobaric labeling-based metabolite feature extraction, metabolite quantification, metabolite identification, batch processing of multiple data files, parameter optimization, median normalization, statistical analysis, data visualization.
Citation: Hao, L., Zhu, Y., Wei, P., Johnson, J., Buchberger, A., Frost, D., Kao, W.J. and Li, L., “Metandem: An online software tool for mass spectrometry-based isobaric labeling metabolomics“. Analytica Chimica Acta, 1088, 99-106, 2019.
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