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It's unusually cool today in the Washington, DC, area, prompting my landscape designer wife to don her poison ivy hunting apparel and venture into the nether regions of our back yard to keep it safe for us.

We've had a lighter week in infectious diseases events. I'll take advantage of that to share a rare criticism of one of my favorite ID feeds. But first .....

Leptospirosis

This is a tough diagnosis most of the time; it's a relatively uncommon infection in the US, and the early stages don't have particularly novel signs and symptoms; it's just a nonspecific febrile illness. About 10% of cases can progress to a second and more severe stage, often called Weil's disease. It's important to remember that it can be a water-borne pathogen, as illustrated by these 2 recent reports.

First, this week's MMWR provides us with documentation of the leptospirosis outbreak in Puerto Rico following Hurricane Fiona in 2022. Leptospirosis is endemic in parts of Puerto Rico, and a disruption like flooding due to a hurricane increases its reach and can result in disease spikes. Look at these graphs of weekly rainfall and leptospirosis cases - it certainly fixes in my mind the tie between water and leptospirosis.

The MMWR article has a link to a nice clinician fact sheet.

Similarly, there's a new spike in leptospirosis infections in Thailand, so far just in news reports (you'll need Google translate again).

I first took a deep dive into leptospirosis as a medical student when I came upon a landmark article of detective work surrounding an outbreak in St. Louis. Two of the authors were mentors of mine, and they loved to regale me with (probably augmented) tales of tracking rats through the sewers of St. Louis. I'm sure this contributed to my choice of pediatric infectious diseases as a career, though not to the extent that I've chased sewer rats.

Mixed Messages About Vaccine Protection From Long Covid

A new article reached a different conclusion from several other reports showing that covid vaccination is somewhat protective against long covid, now better termed PASC (Post-Acute Sequelae of COVID-19). The new study is a retrospective cohort study mining an administrative database from a single (large) healthcare system. The bottom line is (of course!) towards the bottom of the table: no real differences in PASC rates based on vaccine status. Also note this was primarily a study of adults.

Is this a flawed study? Are the authors' conclusions wrong? Well, no to both. We will have differences in conclusions from such studies primarily when we are seeing retrospective studies that rely on administrative databases. The authors did a heroic job of attempting to adjust for various errors in how such data is recorded, but it's impossible to account for everything. Thus, we can have errors in diagnosis, diagnostic code assignment, and missing data, among other issues. Couple that with different definitions of PASC and the likely heterogenous pathogenesis of different forms of PASC, and it's a recipe for conflicting study results. I think we likely will have a clearer picture of PASC, including whether covid vaccination can offer some protection, but it will take prospective longitudinal studies which require more time for data collection and analysis. A longer discussion of the science of PASC is reviewed in Nature Medicine. In the meantime, studies like this one help us fine tune future studies.

Shame on CIDRAP

CIDRAP (Center for Infectious Disease and Research Policy at the University of Minnesota) is one of my favorite daily feeds. I think they blew it in mentioning FDA clearance of a new Lyme test; not only is it not newsworthy, but it could lead some individuals to chase harmful Lyme disease testing. I could be guilty of the same by even mentioning it here.

First of all, FDA clearance of diagnostic tests is a relatively low bar to clear. Although I couldn't find any FDA commentary on the test in question (I guess that would require a Freedom of Information Act request), I did link to the criteria that I think likely were used in this setting, because the particular methodology this test utilizes is nothing new. So, I believe the manufacturer would only need to show "substantial equivalence" to existing tests. This is not the same as showing the new test improved diagnostic accuracy or improved healthcare outcomes. Here's the summary of applicable FDA guidance:

"Studies to Demonstrate Substantial Equivalence

The types of studies typically used to demonstrate substantial equivalence may include the following:

  • In the majority of cases, analytical studies using clinical samples (sometimes supplemented by carefully selected artificial samples) are sufficient.
  • For some IVDs, the link between analytical performance and clinical performance is not well defined. In these circumstances, clinical information may be warranted.
  • FDA rarely requires prospective clinical studies for IVDs, but regularly requests clinical samples with sufficient laboratory and/or clinical characterization to allow an assessment of the clinical validity of a new device. This is usually expressed in terms of clinical sensitivity and clinical specificity or agreement."

This new Lyme test is simply an immunoblot, a very common type of test utilized in multiple settings but with the drawback that interpretation is somewhat subjective - a human needs to decide if a band is prominent enough to be considered present.

When I dug deeper to find supporting studies for this particular test, I became more alarmed. While there are some preliminary studies that I think might have used this new immunoblot method, they don't answer any clinical performance questions. More worrisome is that the test will be sold by a California lab called IGeneX, a company that offers many Lyme tests that, in my opinion, have falsely diagnosed many of my patients with Lyme disease. They often rely on their own interpretations of what constitutes a positive test and provide no reliable scientific evidence to suggest their methodology is valid. In fact, the press release for this new test stated that "Results interpretation is based upon new criteria and not CDC criteria."

Even now on their website they steer providers and patients away from the standardized two-tier testing preferred by CDC. Here's a quote from the IGeneX website: "Lyme disease is typically diagnosed by a two-tiered testing (TTT) approach involving an enzyme-linked immunosorbent assay (ELISA) followed by a Western blot test. However, the sensitivity of these commercially available tests is poor, meaning they can miss active infections. Experts advise against this testing technique due to the ambiguity of its results." It's easy to find a so-called expert to say anything. Again, in my opinion, this lab is to be avoided, and you'll notice I didn't provide a link to them. I'm disappointed CIDRAP gave them free publicity.

Lyme disease testing is far from ideal, and it's certainly possible this new test is an improvement, though I doubt it. CDC explains diagnostic testing for Lyme disease, including the recommended two-tiered testing options. I suspect IGeneX might try to claim that their new immunoblot can fulfill CDC recommendations, but I'm concerned that they will use unsubstantiated rules for interpretation of a positive immunoblot result, as they have for similar tests in their lab.

COVID Crystal Ball

Last week my wife and I got our new covid vaccines, more based on upcoming travel plans rather than any immediate concerns about getting covid. In fact, things seem to be winding down. According to the latest CDC clairvoyance, "we estimate that COVID-19 infections are growing or likely growing in 7 states, declining or likely declining in 16 states, and are stable or uncertain in 25 states." (Not a totally reassuring conviction if half the states could be uncertain!)

I couldn't find a separate precise definition of cutoffs for their categories, but from viewing the data it appears that the Stable or Uncertain category is defined as a probability that the epidemic is growing in those states as between 0.5 and 0.75. By comparison, all the Growing states had probabilities of 0.93 and above.

Curmudgeon-in-Residence

I think I've paid my dues long enough to be entitled to curmudgeon status. The new Lyme test thing reminded me of my dismay that some of the children I've seen in my practice over the years were harmed by use of misleading diagnostic tests resulting in prolonged and unnecessary antibiotic use. I wear my Statler and Waldorf credentials proudly. I think I bear more of a resemblance to Statler.

Now, to cool off a bit, I'll take a quick stroll in my (safer) back yard.

I've been thinking for a while about taking a break to reassess this blog. First, I'm not sure if the focus is optimal and whether this blog serves any unique function that isn't available elsewhere on the web. Second, I've not been happy with the design of the web site for some time, plus I've heard about problems with the subscription sign up widget not working now. I don't know that there is any good time for a pause, but now seems pretty good both from my schedule and from covid's (unpredictable) schedule.

I expect this may take at least a month or so - I want to work within the GWU system where my site is housed to look at tracking data and fixes available there, as well as to think about an entirely new site if I do decide to continue. I will provide an update post when I have a better idea of timing.

At the time I am writing this, we are all waiting for expected FDA approval of this fall's covid vaccines directed against the XBB lineage. ACIP has a meeting set for September 12 to discuss this, so I expect FDA's notice any second now! Also watch for the ACIP meeting on maternal RSV vaccination on September 22.

Nothing strikingly new on the variant front. Press releases from Pfizer and Moderna state their fall vaccines offer some immunity against BA.2.86 in addition to XBB lineages, and investigators have announced (on social media!) similar good news from in vitro studies. As usual, I'm waiting for actual data that I can assess myself.

Here is a quick update on noteworthy items from this week:

Influenza vaccine 2023 preliminary effectiveness in southern hemisphere looks very good, especially for kids. This bodes well for those who elect to receive flu vaccine for the upcoming season.

Covid variant BA.2.86 caused an outbreak in a nursing home in the East of England region of the UK - in the link, scroll down about 1/3 of the way. The attack rate was 86.6% (33 of 38 residents); so far 22 of the 33 positives have been sequenced and are BA.2.86. 29 of the 33 had received a spring covid vaccine booster. Only 1 resident required hospitalization. From the limited data presented, it appears that this very high risk population had relatively mild courses of illness.

During my hiatus, you may want to look at a few of those gazillion sites that I've found useful.

ProMED - https://promedmail.org/

CIDRAP Newsletter - https://www.cidrap.umn.edu/newsletter

CDC COVID Data Tracker - https://covid.cdc.gov/covid-data-tracker/#datatracker-home

CDC Health Alert Network - https://emergency.cdc.gov/han/updates.asp

Biobot Network of Wastewater Treatment Plants (includes both covid and mpox) - https://biobot.io/data/?utm_source=substack&utm_medium=email

United Kingdom COVID notifications - https://www.gov.uk/email-signup?topic=/coronavirus-taxon

Remember that comparing covid numbers now to those from last winter or prior years can be very misleading because of dismantling of some tracking systems as well as unreported home testing and lack of testing in general. Even covid tracking for ED visits, hospitalizations, and deaths all are significantly changed. Probably only the wastewater methodology has remained similar over the few years, so I'm watching those trends more closely.

And one final optimistic note I picked up from David Brooks of the NY Times in his August 31 opinion piece (subscription required). The title was "People are More Generous Than You Think" and he referred to a scientific publication in a psychology journal that I found pretty surprising. For all I know he cherry-picked this article to come up with a heartening message, I didn't take the time to do a formal lit search and I certainly don't keep up with this subject matter.

In the study, almost 200 people in total, from 3 low-income and 4 high-income countries, were selected to receive $10,000 for whatever they wanted to use if for. The only strings attached were that they must report to the investigators how they used the money and they agreed to be randomized to either share their use of the money on Twitter or keep quiet about what they used it for. The investigators figured that the group publicizing this on Twitter would spend less of the money on themselves. That wasn't the case however. On average the individuals spent $6400 of the total on others, including $1700 on charitable donations. By and large, spending of those from lower income countries didn't differ that much from the higher income group, though the latter had slightly higher gifts to charity. The article really brightened my day, take a peek at it.

Take care and stay well,

Bud